具有III型分泌系统的Pseudomonas moraviensis FP1761植物益生功能及其全基因组分析

 本研究从节瓜根际分离到一株具有防病促生功能的荧光类假单胞菌FP1761。该菌株对部分植物病原真菌和细菌具有拮抗能力,能够解钾、解有机磷和无机磷,可产生氨、蛋白酶、嗜铁素、吲哚乙酸。生物测定表明菌株FP1761可显著促进小麦生长。生理生化、平均核苷酸相似度、16S rDNA和多基因分析将FP1761鉴定为摩拉维亚假单胞菌(Pseudomonas moraviensis)。菌株FP1761基因组草图全长6.12 Mb,(G+C)含量为59.9%,共编码5467个基因序列。将该菌株与种内3个代表性菌株进行泛基因组和核心基因组分析,共产生 4 357个共有基因,菌株FP1761特有基因327个。利用antiSMASH对菌株次生代谢基因簇进行预测,发现其含有8个潜在的次生代谢产物基因簇。其中两个基因簇与嗜铁素pyoverdine合成相关,未见聚酮类合成基因。基因组分析发现,该菌株具有与病原性假单胞菌相似的III型分泌系统,但丢失了效应蛋白调控因子hrpS和转运相关的hrpH和hrpK1基因。对全基因组扫描,菌株FP1761仅保留了病原性假单胞菌的保守效应蛋白AvrE和HopAA1-1。FP1761是目前已发现的唯一具有III型分泌系统的摩拉维亚假单胞菌。本研究表明摩拉维亚假单胞菌FP1761具有潜在的植物防病促生功能,但其III型分泌系统与植物益生互作机制有待进一步解析。     

Deep neural network algorithm for estimating maize biomass based on simulated Sentinel 2A vegetation indices and leaf area index

Accurate estimation of biomass is necessary for evaluating crop growth and predicting crop yield.Biomass is also a key trait in increasing grain yield by crop breeding.The aims of this study were(i)to identify the best vegetation indices for estimating maize biomass,(ii)to investigate the relationship between biomass and leaf area index(LAI)at several growth stages,and(iii)to evaluate a biomass model using measured vegetation indices or simulated vegetation indices of Sentinel 2A and LAI using a deep neural network(DNN)algorithm.The results showed that biomass was associated with all vegetation indices.The three-band water index(TBWI)was the best vegetation index for estimating biomass and the corresponding R2,RMSE,and RRMSE were 0.76,2.84 t ha−1,and 38.22%respectively.LAI was highly correlated with biomass(R2=0.89,RMSE=2.27 t ha−1,and RRMSE=30.55%).Estimated biomass based on 15 hyperspectral vegetation indices was in a high agreement with measured biomass using the DNN algorithm(R2=0.83,RMSE=1.96 t ha−1,and RRMSE=26.43%).Biomass estimation accuracy was further increased when LAI was combined with the 15 vegetation indices(R2=0.91,RMSE=1.49 t ha−1,and RRMSE=20.05%).Relationships between the hyperspectral vegetation indices and biomass differed from relationships between simulated Sentinel 2A vegetation indices and biomass.Biomass estimation from the hyperspectral vegetation indices was more accurate than that from the simulated Sentinel 2A vegetation indices(R2=0.87,RMSE=1.84 t ha−1,and RRMSE=24.76%).The DNN algorithm was effective in improving the estimation accuracy of biomass.It provides a guideline for estimating biomass of maize using remote sensing technology and the DNN algorithm in this region.     

一种改进的双能量源电动汽车功率分配策略

以并联式双能量源(锂电池组&超级电容)纯电动汽车为研究对象,提出一种改进的功率分配策略。这种功率分配策略在模糊控制的基础上增加深度神经网络训练过程,以获得更精确的功率分配因子。通过整车模型构建、功率分配模型构建、功率分配策略制定、仿真验证结果分析后得出结论:与电量消耗功率分配策略相比,这种改进的功率分配策略能优化锂电池组和超级电容二者之间的功率分流,限制锂电池组充放电的峰值电流,延长复合储能系统的工作寿命,提升动力系统的工作效率。     

一种新型卷积神经网络植物叶片识别方法

为提高植物叶片识别的准确率及减少计算代价,在Pytorch框架下提出一种融合了深度卷积生成式对抗网络(DCGAN)和迁移学习(TL)的新型卷积神经网络叶片识别方法。首先,对植物叶片图像进行预处理,通过DCGAN对样本数据库扩充;其次,利用迁移学习将Inception v3模型应用于图像数据处理上,以提高植物叶片识别的准确率;最后,通过对比实验对该方法的有效性进行验证。结果表明:该方法可以获得96.57%的植物叶片识别精度,同时参数训练的迭代次数由4000次缩短到560次。     

Performance and uncertainty analysis of a short-term climate reconstruction based on multi-source data in the Tianshan Mountains region,China

Short-term climate reconstruction, i.e., the reproduction of short-term(several decades) historical climatic time series based on the relationship between observed data and available longer-term reference data in a certain area, can extend the length of climatic time series and offset the shortage of observations. This can be used to assess regional climate change over a much longer time scale. Based on monthly grid climate data from a Coupled Model Inter-comparison Project phase 5(CMIP5) dataset for the period of 1850–2000, the Climatic Research Unit(CRU) dataset for the period of 1901–2000 and the observed data from 53 meteorological stations located in the Tianshan Mountains region(TMR) of China during the period of 1961–2011, we calibrated and validated monthly average temperature(MAT) and monthly accumulated precipitation(MAP) in the TMR using the delta, physical scaling(SP) and artificial neural network(ANN) methods. Performance and uncertainty during the calibration(1971–1999) and verification(1961–1970) periods were assessed and compared using traditional performance indices and a revised set pair analysis(RSPA) method. The calibration and verification processes were subjected to various sources of uncertainty due to the influence of different reconstructed variables, different data sources, and/or different methods used. According to traditional performance indices, both the CRU and CMIP5 datasets resulted in satisfactory calibrated and verified MAT time series at 53 meteorological stations and MAP time series at 20 meteorological stations using the delta and SP methods for the period of 1961–1999. However, the results differed from those obtained by the RSPA method. This showed that the CRU dataset produced a low degree of uncertainty(positive connection degree) during the calibration and verification of MAT using the delta and SP methods compared to the CMIP5 dataset. Overall, the calibrated and verified MAP had a high degree of uncertainty(negative connection degree) regardless of the dataset or reconstruction method used. Therefore, the reconstructed time series of MAT for the period of 1850(or 1901)–1960 based on the CRU and CMIP5 datasets using the delta and SP methods could be used for further study. The results of this study will be useful for short-term(several decades) regional climate reconstruction and longer-term(100 a or more) assessments of regional climate change.     

基于粒子群算法优化BP神经网络的土壤含水量短期预测模型

为提高土壤含水量预测精度,基于物联网监测数据,提出了粒子群算法(PSO)优化BP神经网络的土壤含水量预测方法。首先应用主成分分析法筛选出影响土壤含水量的关键影响因子,然后构建8-5-1的BP神经网络拓扑结构,应用粒子群算法优化BP神经网络的初始权值和阈值。结果表明:与传统BP神经网络相比,新模型优化了网络结构,避免了陷入局部最优解,具有良好的预测效果;模型的评价指标平均绝对误差、平均绝对百分误差、误差均方根分别为0.259 2、0.010 5和0.135 6,与单一BP神经网络相比,预测精度更高,可满足实际的土壤含水量预测的需要。     

基于PLSR-BP复合模型的红壤有机质含量反演研究

对红壤地区土壤有机质进行快速预测,以满足智慧农业与精准施肥的需要。以江西省奉新县北部为研究区域,采用1 km×1 km标准格网划分研究区进行采样,共得到红壤样本248个。对土壤光谱进行了包含分数阶导数在内的3种数学变换方法,将经过P=0.01显著性检验的波段用于模型的构建,选用偏最小二乘回归(PLSR)和BP神经网络建立土壤有机质含量预测模型。结果表明:当对红壤光谱数据进行1.5阶导数变换后再使用PLSR-BP复合模型对土壤有机质含量进行预测时的结果为最优,训练集R~2=0.89,RMSE=4.68g·kg~(-1),验证集R~2=0.87,RMSE=5.55g·kg~(-1),RPD=2.75。1.5阶导数对红壤光谱数据的变换能够更好地突出与有机质相关的特征信息,有助于其含量预测。PLSR-BP复合模型预测精度优于单一模型,能够较好地预测红壤有机质含量,为精准农业快速监测红壤有机质含量提供了新的途径。     

Artificial neural network modeling of microbial community structures in the Atlantic Forest of Brazil

Microbial communities vary across the landscape in forest soils, but prediction of their biomass and composition is a difficult challenge due to the large numbers of variables that influence their community structures. Here we examine the use of artificial neural network (ANN) models for extraction of patterns among soil chemical variables and microbial community structures in forest soils from three regions of the Atlantic Forest of Brazil. At each location, variations in soil chemical properties and FAME profiles of microbial community structures were mapped at 20 × 20 m intervals within 10 ha parcels. Geostatistical analyses showed that spatial variability in soil physical and chemical variables could be mapped at scale distances of 20 m, but that FAME profiles representing the microbial communities were highly variable and had no spatial dependence at the same scale in most cases. RDA analysis showed that FAME signatures representing different microbial groups were positively associated with soil pH, OM, P and base cations concentrations, whereas microbial biomass was negatively associated with the same environmental factors. In contrast, ANN models revealed clear relationships between microbial community structures at each parcel location, and generated verifiable predictions of variations in FAME profiles in relation to soil pH, texture, and the relative abundances of base cations. The results suggest that ANN modeling provides a useful approach for describing the relationships between microbial community structures and soil properties in tropical forest soils that were not able to be captured using geostatistical and RDA analyses.     

基于WT-CNN-LSTM的溶解氧含量预测模型

溶解氧（Dissolved oxygen, DO）含量是影响水产养殖产量的重要因素之一，具有时序性、不稳定性和非线性等特点，且其影响因子过多、存在复杂的耦合关系，难以实现精准预测。针对传统长短时记忆神经网络（Long short term memory, LSTM）预测模型易引入冗余数据，且在训练过长序列时会出现梯度消失现象，从而不能捕捉因子间长期的依赖性问题，提出了基于小波变换（Wavelet transform, WT）、卷积神经网络（Convolutional neural network, CNN）和LSTM的溶解氧含量预测模型。首先，使用WT降低数据噪声；然后，使用CNN深度挖掘各变量之间的潜在关系；最后，利用LSTM的时序性预测2h后的水产养殖溶解氧含量。结果表明，本文提出的WT-CNN-LSTM模型预测效果良好，其平均绝对误差、均方根误差和决定系数分别为0.138、0.229和0.954，比传统LSTM模型分别优化了28.87%、21.03%和4.61%。     

基于卷积神经网络的小麦产量预估方法

小麦产量是评估农业生产力的重要指标之一,针对小麦产量人工预估困难,提出将卷积神经网络运用于小麦产量预估,为农业生产力的预估提供参考,指导农业生产管理决策。利用无人机分别在河南省新乡、漯河两地进行图片采集,并以之构建麦穗数据集,分为正样本(麦穗)和负样本(叶子和背景)。针对小麦常规的生理形态和生长环境,设计卷积神经网络识别模型,以图像金字塔构建多尺度滑动窗口,以非极大值抑制(NMS)去除重叠率较高的目标框,实现对单位面积内麦穗的计数,并利用随机采样的方式对大田麦穗进行单位面积图像采样,以采样图像中麦穗数量的平均值作为产量预估基准,进一步实现麦穗产量预估。随机抽取100幅不同小麦图片进行测试,与人工计数结果进行对比,准确率达到97.30%,漏检率为0.34%,误检率为2.36%,误差率为2.70%。试验结果表明,此方法能够克服环境中的多种噪声干扰,能够在不同光照条件下对麦穗进行计数和产量预估。